download all files in zip format or the separate files here:
SC.zip - contains all the files below
Main.m - main function that accepts Protein sequences, a deterministic peptide pattern (SP) that is common to all the Proteins,
and the number of iterations that should be sufficient for convergence. Output: a reduced set of fused proteins that are all inconsistent.
sp_pp_aline.m - SP-alignment function. Alignes a cell array of Proteins by the SP that is common to all of them, and produces a consistent Matrix relationship among them.
species_counting_byId_merge.m - Preforms one step of Proteins fusion according to their consistency Matrix.
merge.m - merge any two proteins that have a consistency relationship.
count_mutation.m - counts the number of different Amino-acids for any pair of proteins (upper-triangle matrix).
get_count_by_mutation_dis.m - counts the number of inconsistencies for minimal number of differences that is larger than some #.
Algo.doc - step by step example of how the algorithm work for the simple example that is given in the paper.